PlantPromoterDB promoter information of AT1G74470
Summary of Gene (AT1G74470)
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Overview
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Focused view (chromosome 1: 27990248-27991447)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G74470 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G74470
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 645 | + | 27991178 | -70 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 27991164 | -84 |
| TSS clone | A | clone | + | 27991165 | -83 |
| TSS clone | C | clone | + | 27991166 | -82 |
| TSS clone | A | clone | + | 27991174 | -74 |
| TSS clone | A | clone | + | 27991176 | -72 |
| TSS clone | A | clone | + | 27991178 | -70 |
| TSS clone | C | clone | + | 27991179 | -69 |
| TSS clone | G | clone | + | 27991181 | -67 |
| TSS clone | G | clone | + | 27991183 | -65 |
| TSS clone | A | clone | + | 27991185 | -63 |
| TSS clone | C | clone | + | 27991186 | -62 |
| TSS clone | A | clone | + | 27991199 | -49 |
| TSS clone | G | clone | + | 27991200 | -48 |
| TSS clone | A | clone | + | 27991201 | -47 |
| TSS clone | A | clone | + | 27991208 | -40 |
| TSS clone | T | clone | + | 27991209 | -39 |
| TSS clone | T | clone | + | 27991212 | -36 |
| TSS clone | G | clone | + | 27991214 | -34 |
| TSS clone | A | clone | + | 27991215 | -33 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGAGCCCATAA | + | 27990924 | 27990934 | -324 | -314 | |||
| AtREG485 | TGAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG477 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CTACGTGG | + | 27990974 | 27990981 | -274 | -267 | |||
| AtREG495 | CTACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | AAATGGGC | + | 27991007 | 27991014 | -241 | -234 | |||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAATACCC | + | 27991028 | 27991035 | -220 | -213 | |||
| AtREG602 | AAATACCC | PPDB Motif | PLACE Motif | ||||||
| REG | ATCCAACGG | + | 27991082 | 27991090 | -166 | -158 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||