Summary of Gene (AT1G74730)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT1G74730.1 TSS from cDNA TSS information AT1G74730 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 28078964 | -31 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 28078857 | -138 |
TSS clone | T | clone | + | 28078916 | -79 |
TSS clone | A | clone | + | 28078964 | -31 |
TSS clone | T | clone | + | 28078965 | -30 |
TSS clone | T | clone | + | 28078966 | -29 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACCGGA | + | 28078823 | 28078831 | -172 | -164 | |||
AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CTGACGTGGCAG | + | 28078879 | 28078890 | -116 | -105 | |||
AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG468 | CGTGGCAG | ABA | PPDB Motif |   | PLACE Motif | GCCAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |