PlantPromoterDB promoter information of AT1G75180.1

Summary of Gene (AT1G75180.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G75180 TAIR NCBI
Gene model	AT1G75180.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19400.2); Has 70 Blast hits to 70 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 28218911-28217712)

`Genome position from initiation codon` `AT1G75180.2 AT1G75180.3 TSS from cDNA TSS information AT1G75180.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G75180.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 2 - 28218805 -894

TSS peak A 4 - 28218702 -791

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	2	-	28218805	-894
TSS peak	`A`	4	-	28218702	-791

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone - 28218807 -896

TSS clone T clone - 28218394 -483

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	-	28218807	-896
TSS clone	`T`	clone	-	28218394	-483

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTCTTCCTCT - 28218768 28218782 -857 -871

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTCTTCCTCT`	-	28218768	28218782	-857	-871
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GCCCATCT - 28218780 28218787 -869 -876

AtREG572 GCCCATCT PPDB Motif GCCCA PLACE Motif

REG GCGTCGTTTT - 28218883 28218892 -972 -981

AtREG439 GCGTCGTT   PPDB Motif PLACE Motif

AtREG415 CGTCGTTT PPDB Motif PLACE Motif

AtREG520   GTCGTTTT PPDB Motif PLACE Motif

REG TAAAAGCCCAATAAAGGCCCAATA - 28218925 28218948 -1014 -1037

AtREG549 TAAAAGCC                 PPDB Motif PLACE Motif

AtREG409 AAAAGCCC                PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407    AAGCCCAA              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402     AGCCCAAT             PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355      GCCCAATA   GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG417       CCCAATAA           PPDB Motif GCCCA PLACE Motif

AtREG467            TAAAGGCC      PPDB Motif PLACE Motif

AtREG359             AAAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353              AAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356               AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352                GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG AAAACGGCACG - 28218982 28218992 -1071 -1081

AtREG531 AAAACGGC    PPDB Motif AAACG(C/G) PLACE Motif

AtREG500 AAACGGCA   PPDB Motif AAACG(C/G) PLACE Motif

AtREG522    ACGGCACG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GCCCATCT`		-	28218780	28218787	-869	-876
	AtREG572	`GCCCATCT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GCGTCGTTTT`		-	28218883	28218892	-972	-981
	AtREG439	`GCGTCGTT`		PPDB Motif		PLACE Motif
	AtREG415	`CGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG520	`GTCGTTTT`		PPDB Motif		PLACE Motif
REG	`TAAAAGCCCAATAAAGGCCCAATA`		-	28218925	28218948	-1014	-1037
	AtREG549	`TAAAAGCC`		PPDB Motif		PLACE Motif
	AtREG409	`AAAAGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG402	`AGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG355	`GCCCAATA GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG467	`TAAAGGCC`		PPDB Motif		PLACE Motif
	AtREG359	`AAAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG353	`AAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`AAAACGGCACG`		-	28218982	28218992	-1071	-1081
	AtREG531	`AAAACGGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG500	`AAACGGCA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG522	`ACGGCACG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None