Summary of Gene (AT1G75295.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
TSS from cDNA TSS information AT1G75295.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | - | 28268407 | AT1G75330.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 28268407 | AT1G75330.1 |
TSS clone | A | clone | - | 28268406 | AT1G75330.1 |
TSS clone | A | clone | - | 28268403 | AT1G75330.1 |
TSS clone | T | clone | - | 28268399 | AT1G75330.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTCTTATAAAGG | - | 28268434 | 28268445 | AT1G75330.1 | |
Y Patch | CTCTCTCT | - | 28268395 | 28268402 | AT1G75330.1 | |
Y Patch | TCTCTCTT | - | 28268441 | 28268448 | AT1G75330.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAAAGCCCAATAAG | - | 28268466 | 28268480 | AT1G75330.1 | ||||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG611 | CCAATAAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAATGGGCCTAG | - | 28268484 | 28268495 | AT1G75330.1 | ||||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG475 | GGGCCTAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |