PlantPromoterDB promoter information of AT1G75300
Summary of Gene (AT1G75300)
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Overview
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Focused view (chromosome 1: 28244602-28245801)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G75300 5'->3' (+) Promoter sequence AT1G75250.1
AT1G75250.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G75300
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 28255495 | -57 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | - | 28245525 | AT1G75250.1, AT1G75250.2 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCTTATAA | - | 28245553 | 28245560 | AT1G75250.1, AT1G75250.2 | |
| Y Patch | TCTCTTTCCT | - | 28245479 | 28245488 | AT1G75250.1, AT1G75250.2 | |
| Y Patch | CTCTCTCTTT | - | 28245493 | 28245502 | AT1G75250.1, AT1G75250.2 | |
| Y Patch | CTCTCTTTTTCTCCTCCT | - | 28245558 | 28245575 | AT1G75250.1, AT1G75250.2 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||