Summary of Gene (AT1G75780.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G75780.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 13 | - | 28453691 | -89 |
TSS peak | A | 13 | - | 28453634 | -32 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 28453640 | -38 |
TSS clone | T | clone | - | 28453639 | -37 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCCTCCTTCTTCTCCTTC | - | 28453644 | 28453664 | -42 | -62 |
Y Patch | CCTCTCTCTCTCCCTCTCC | - | 28453672 | 28453690 | -70 | -88 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGTTAAA | - | 28453759 | 28453766 | -157 | -164 | |||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | AAAGTCAA | - | 28453836 | 28453843 | -234 | -241 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |