PlantPromoterDB promoter information of AT1G75970.1
Summary of Gene (AT1G75970.1)
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Overview
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Focused view (chromosome 1: 28516706-28515507)
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Genome position
TSS from cDNA TSS information AT1G75970.1 5'->3' (-) Promoter sequence AT1G75950.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G75970.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 13 | + | 28516632 | AT1G75950.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 28516605 | AT1G75950.1 |
| TSS clone | A | clone | + | 28516632 | AT1G75950.1 |
| TSS clone | T | clone | + | 28516633 | AT1G75950.1 |
| TSS clone | T | clone | + | 28516637 | AT1G75950.1 |
| TSS clone | C | clone | + | 28516640 | AT1G75950.1 |
| TSS clone | T | clone | + | 28516656 | AT1G75950.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATATATAAAGA | + | 28516598 | 28516611 | AT1G75950.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GACCGACTTA | + | 28516571 | 28516580 | AT1G75950.1 | ||||
| AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
| AtREG582 | CCGACTTA | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||