PlantPromoterDB promoter information of AT1G75970.1
Summary of Gene (AT1G75970.1)
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Overview
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Focused view (chromosome 1: 28531006-28529807)
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Genome position
TSS from cDNA TSS information AT1G75970.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G75970.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 18 | - | 28530761 | AT1G76010.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 28530790 | AT1G76010.1 |
| TSS clone | T | clone | - | 28530768 | AT1G76010.1 |
| TSS clone | C | clone | - | 28530764 | AT1G76010.1 |
| TSS clone | T | clone | - | 28530763 | AT1G76010.1 |
| TSS clone | A | clone | - | 28530761 | AT1G76010.1 |
| TSS clone | G | clone | - | 28530760 | AT1G76010.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATATATC | - | 28530794 | 28530802 | AT1G76010.1 | |
| Y Patch | CTCTTCCT | - | 28530713 | 28530720 | AT1G76010.1 | |
| Y Patch | TTCTTCTTCC | - | 28530765 | 28530774 | AT1G76010.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTGAACCG | - | 28530857 | 28530864 | AT1G76010.1 | ||||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGGTTCGGTTTAA | - | 28530884 | 28530896 | AT1G76010.1 | ||||
| AtREG655 | TGGTTCGG | PPDB Motif | PLACE Motif | ||||||
| AtREG451 | GGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||