PlantPromoterDB promoter information of AT1G75970.1
Summary of Gene (AT1G75970.1)
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Overview
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Focused view (chromosome 1: 28534256-28533057)
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Genome position
TSS from cDNA TSS information AT1G75970.1 5'->3' (-) Promoter sequence AT1G76030.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G75970.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 2 | + | 28533900 | AT1G76030.1 |
| TSS peak | A | 5 | - | 28533563 | AT1G76020.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | - | 28533557 | AT1G76020.1 |
| TSS clone | C | clone | + | 28533836 | AT1G76030.1 |
| TSS clone | A | clone | + | 28533845 | AT1G76030.1 |
| TSS clone | A | clone | + | 28533853 | AT1G76030.1 |
| TSS clone | T | clone | + | 28533854 | AT1G76030.1 |
| TSS clone | A | clone | + | 28533855 | AT1G76030.1 |
| TSS clone | A | clone | + | 28533860 | AT1G76030.1 |
| TSS clone | C | clone | + | 28533873 | AT1G76030.1 |
| TSS clone | T | clone | + | 28533875 | AT1G76030.1 |
| TSS clone | C | clone | + | 28533881 | AT1G76030.1 |
| TSS clone | T | clone | + | 28533883 | AT1G76030.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCTCT | + | 28533864 | 28533899 | AT1G76030.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GTGACGTGGCAG | + | 28533701 | 28533712 | AT1G76030.1 | ||||
| AtREG466 | GTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG388 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG468 | CGTGGCAG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| REG | TAATGGGCCATA | + | 28533727 | 28533738 | AT1G76030.1 | ||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | ATGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG437 | TGGGCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG479 | GGGCCATA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | CTGCCACGTCAC | - | 28533701 | 28533712 | AT1G76020.1 | ||||
| AtREG468 | CTGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG466 | CACGTCAC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | TATGGCCCATTA | - | 28533727 | 28533738 | AT1G76020.1 | ||||
| AtREG479 | TATGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG437 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||