PlantPromoterDB promoter information of AT1G76160
Summary of Gene (AT1G76160)
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Overview
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Focused view (chromosome 1: 28581570-28580371)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G76160 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G76160
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 18 | - | 28581112 | -92 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 28581132 | -112 |
| TSS clone | T | clone | - | 28581131 | -111 |
| TSS clone | C | clone | - | 28581128 | -108 |
| TSS clone | A | clone | - | 28581112 | -92 |
| TSS clone | A | clone | - | 28581111 | -91 |
| TSS clone | C | clone | - | 28581102 | -82 |
| TSS clone | C | clone | - | 28581089 | -69 |
| TSS clone | A | clone | - | 28581086 | -66 |
| TSS clone | G | clone | - | 28581085 | -65 |
| TSS clone | A | clone | - | 28581084 | -64 |
| TSS clone | A | clone | - | 28581080 | -60 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTTCTCT | - | 28581117 | 28581125 | -97 | -105 |
| Y Patch | TCTCTCTCTCTCT | - | 28581147 | 28581159 | -127 | -139 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGTCC | - | 28581212 | 28581219 | -192 | -199 | |||
| AtREG523 | GTGGGTCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||