PlantPromoterDB promoter information of AT1G76740.1

Summary of Gene (AT1G76740.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G76740 TAIR NCBI
Gene model	AT1G76740.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76840.1); Has 3136 Blast hits to 2432 proteins in 274 species: Archae - 9; Bacteria - 251; Metazoa - 1340; Fungi - 208; Plants - 114; Viruses - 8; Other Eukaryotes - 1206 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 28804235-28805434)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G76740.1 5'->3' (+) Promoter sequence AT1G76730.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G76740.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 4 + 28805180 -55

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	4	+	28805180	-55

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TAAATGGGCCTTTT + 28804892 28804905 -343 -330

AtREG443 TAAATGGG       PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353     TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG359      GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

AtREG459       GGCCTTTT PPDB Motif PLACE Motif

REG GCCCAATAAG + 28804910 28804919 -325 -316

AtREG355 GCCCAATA   PPDB Motif GCCCA PLACE Motif

AtREG417 CCCAATAA PPDB Motif GCCCA PLACE Motif

AtREG611   CCAATAAG PPDB Motif PLACE Motif

REG CCACGTCAT + 28804976 28804984 -259 -251

AtREG419 CCACGTCA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG483 CACGTCAT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ACACGCGCT + 28804989 28804997 -246 -238

AtREG385 ACACGCGC PPDB Motif ACGCGC PLACE Motif ACACNNG

AtREG381 CACGCGCT PPDB Motif ACGCGC PLACE Motif

REG AGCGCGTG + 28805044 28805051 -191 -184

AtREG381 AGCGCGTG PPDB Motif ACGCGC PLACE Motif

REG GCCCAAAA + 28805120 28805127 -115 -108

AtREG529 GCCCAAAA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TAAATGGGCCTTTT`		+	28804892	28804905	-343	-330
	AtREG443	`TAAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG386	`AAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG361	`AATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`ATGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG359	`GGGCCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG459	`GGCCTTTT`		PPDB Motif		PLACE Motif
REG	`GCCCAATAAG`		+	28804910	28804919	-325	-316
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG417	`CCCAATAA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG611	`CCAATAAG`		PPDB Motif		PLACE Motif
REG	`CCACGTCAT`		+	28804976	28804984	-259	-251
	AtREG419	`CCACGTCA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`
	AtREG483	`CACGTCAT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`ACACGCGCT`		+	28804989	28804997	-246	-238
	AtREG385	`ACACGCGC`		PPDB Motif	`ACGCGC`	PLACE Motif	`ACACNNG`
	AtREG381	`CACGCGCT`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`AGCGCGTG`		+	28805044	28805051	-191	-184
	AtREG381	`AGCGCGTG`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`GCCCAAAA`		+	28805120	28805127	-115	-108
	AtREG529	`GCCCAAAA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 4 - 28804755 AT1G76730.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	4	-	28804755	AT1G76730.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 28804839 AT1G76730.1

TSS clone G clone - 28804758 AT1G76730.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	28804839	AT1G76730.1
TSS clone	`G`	clone	-	28804758	AT1G76730.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAAGGCCCATTTA - 28804892 28804905 AT1G76730.1

AtREG459 AAAAGGCC       PPDB Motif PLACE Motif

AtREG359 AAAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361     GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG386      GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443       CCCATTTA PPDB Motif GCCCA PLACE Motif

REG CTTATTGGGC - 28804910 28804919 AT1G76730.1

AtREG611 CTTATTGG   PPDB Motif PLACE Motif

AtREG417 TTATTGGG PPDB Motif GCCCA PLACE Motif

AtREG355   TATTGGGC PPDB Motif GCCCA PLACE Motif

REG ATGACGTGG - 28804976 28804984 AT1G76730.1

AtREG483 ATGACGTG PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419 TGACGTGG PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

REG AGCGCGTGT - 28804989 28804997 AT1G76730.1

AtREG381 AGCGCGTG PPDB Motif ACGCGC PLACE Motif

AtREG385 GCGCGTGT PPDB Motif ACGCGC PLACE Motif ACACNNG

REG CACGCGCT - 28805044 28805051 AT1G76730.1

AtREG381 CACGCGCT PPDB Motif ACGCGC PLACE Motif