Summary of Gene (AT1G77380)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT1G77380 5'->3' (-) Promoter sequence AT1G77370.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 29077390 | -138 |
TSS clone peak | C | clone | - | 29077385 | -133 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 29073886 | AT1G77370.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 29073847 | AT1G77370.1 |
TSS clone | A | clone | + | 29073848 | AT1G77370.1 |
TSS clone | A | clone | + | 29073849 | AT1G77370.1 |
TSS clone | C | clone | + | 29073887 | AT1G77370.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CGTTTTGA | + | 29073746 | 29073753 | AT1G77370.1 | ||||
AtREG653 | CGTTTTGA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TTGCCACGTGTCAT | + | 29073767 | 29073780 | AT1G77370.1 | ||||
AtREG452 | TTGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG438 | CGTGTCAT | ABA | PPDB Motif |   | PLACE Motif |   | |||
REG | TGTCACGTGTT | + | 29073790 | 29073800 | AT1G77370.1 | ||||
AtREG606 | TGTCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG583 | GTCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  |