PlantPromoterDB promoter information of AT1G78660.2
Summary of Gene (AT1G78660.2)
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Overview
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Focused view (chromosome 1: 29585014-29586213)
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Genome position
from initiation codon AT1G78660.1 AT1G78660.3 TSS from cDNA TSS information AT1G78660.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G78660.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 15 | + | 29585844 | -170 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 29585811 | -203 |
| TSS clone | G | clone | + | 29585825 | -189 |
| TSS clone | T | clone | + | 29585845 | -169 |
| TSS clone | C | clone | + | 29585951 | -63 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CATGGGCCC | + | 29585742 | 29585750 | -272 | -264 | |||
| AtREG504 | CATGGGCC | PPDB Motif | GCCCA, CCATGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG391 | ATGGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | CGTAATTA | + | 29585769 | 29585776 | -245 | -238 | |||
| AtREG646 | CGTAATTA | ABA | PPDB Motif | PLACE Motif | |||||
| REG | ATCCACGT | + | 29585795 | 29585802 | -219 | -212 | |||
| AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||