PlantPromoterDB promoter information of AT1G78680

Summary of Gene (AT1G78680)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G78680 TAIR NCBI
Gene model	AT1G78680
Description	The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.

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Overview

Focused view (chromosome 1: 29590033-29591232)

`Genome position from initiation codon` `AT1G78670.1 TSS from cDNA TSS information AT1G78680 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G78680

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 20 + 29593866 -67

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	20	+	29593866	-67

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone + 29593865 -68

TSS clone A clone + 29593866 -67

TSS clone A clone + 29593867 -66

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	+	29593865	-68
TSS clone	`A`	clone	+	29593866	-67
TSS clone	`A`	clone	+	29593867	-66

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTCCTCC + 29593884 29593892 -49 -41

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTCCTCC`	+	29593884	29593892	-49	-41
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AATTGGGCCCT + 29593700 29593710 -233 -223

AtREG418 AATTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG352 ATTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG392   TTGGGCCC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG400    TGGGCCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GTCGTTTT + 29593744 29593751 -189 -182

AtREG520 GTCGTTTT PPDB Motif PLACE Motif

REG ACCACGTGTAC + 29593794 29593804 -139 -129

AtREG544 ACCACGTG    ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG382 CCACGTGT   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG453   CACGTGTA ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACACNNG

AtREG562    ACGTGTAC ABA, Auxin PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AATTGGGCCCT`		+	29593700	29593710	-233	-223
	AtREG418	`AATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG392	`TTGGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG400	`TGGGCCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`GTCGTTTT`		+	29593744	29593751	-189	-182
	AtREG520	`GTCGTTTT`		PPDB Motif		PLACE Motif
REG	`ACCACGTGTAC`		+	29593794	29593804	-139	-129
	AtREG544	`ACCACGTG`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG382	`CCACGTGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG453	`CACGTGTA`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACACNNG`
	AtREG562	`ACGTGTAC`	ABA, Auxin	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 + 29591016 AT1G78670.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	+	29591016	AT1G78670.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 29591013 AT1G78670.1

TSS clone A clone + 29591015 AT1G78670.1

TSS clone T clone + 29591024 AT1G78670.1

TSS clone G clone + 29591026 AT1G78670.1

TSS clone T clone + 29591033 AT1G78670.1

TSS clone C clone + 29591035 AT1G78670.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	29591013	AT1G78670.1
TSS clone	`A`	clone	+	29591015	AT1G78670.1
TSS clone	`T`	clone	+	29591024	AT1G78670.1
TSS clone	`G`	clone	+	29591026	AT1G78670.1
TSS clone	`T`	clone	+	29591033	AT1G78670.1
TSS clone	`C`	clone	+	29591035	AT1G78670.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACGACGCC + 29590766 29590773 AT1G78670.1

AtREG537 ACGACGCC PPDB Motif PLACE Motif

REG CGGACCCG + 29590794 29590801 AT1G78670.1

AtREG491 CGGACCCG PPDB Motif PLACE Motif

REG TGGGCTCA + 29590823 29590830 AT1G78670.1

AtREG485 TGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY

REG CAAAGCCCAATAT + 29590833 29590845 AT1G78670.1

AtREG559 CAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402    AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355     GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509      CCCAATAT PPDB Motif PLACE Motif

REG AGTGGGCTCA + 29590872 29590881 AT1G78670.1

AtREG510 AGTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG485   TGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY