PlantPromoterDB promoter information of AT1G78690.1

Summary of Gene (AT1G78690.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G78690 TAIR NCBI
Gene model	AT1G78690.1
Description	phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Tafazzin (InterPro:IPR000872); BEST Arabidopsis thaliana protein match is: phospholipid/glycerol acyltransferase family protein (TAIR:AT3G05510.2); Has 677 Blast hits to 667 proteins in 233 species: Archae - 0; Bacteria - 232; Metazoa - 222; Fungi - 86; Plants - 42; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 29590602-29591801)

`Genome position from initiation codon` `AT1G78670.1 TSS from cDNA TSS information AT1G78690.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G78690.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 29596609 -393

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	29596609	-393

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 + 29591016 AT1G78670.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	+	29591016	AT1G78670.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 29591013 AT1G78670.1

TSS clone A clone + 29591015 AT1G78670.1

TSS clone T clone + 29591024 AT1G78670.1

TSS clone G clone + 29591026 AT1G78670.1

TSS clone T clone + 29591033 AT1G78670.1

TSS clone C clone + 29591035 AT1G78670.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	29591013	AT1G78670.1
TSS clone	`A`	clone	+	29591015	AT1G78670.1
TSS clone	`T`	clone	+	29591024	AT1G78670.1
TSS clone	`G`	clone	+	29591026	AT1G78670.1
TSS clone	`T`	clone	+	29591033	AT1G78670.1
TSS clone	`C`	clone	+	29591035	AT1G78670.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACGACGCC + 29590766 29590773 AT1G78670.1

AtREG537 ACGACGCC PPDB Motif PLACE Motif

REG CGGACCCG + 29590794 29590801 AT1G78670.1

AtREG491 CGGACCCG PPDB Motif PLACE Motif

REG TGGGCTCA + 29590823 29590830 AT1G78670.1

AtREG485 TGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY

REG CAAAGCCCAATAT + 29590833 29590845 AT1G78670.1

AtREG559 CAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   AAGCCCAA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402    AGCCCAAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355     GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509      CCCAATAT PPDB Motif PLACE Motif

REG AGTGGGCTCA + 29590872 29590881 AT1G78670.1

AtREG510 AGTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG485   TGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY