PlantPromoterDB promoter information of AT1G79340.1

Summary of Gene (AT1G79340.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G79340 TAIR NCBI
Gene model	AT1G79340.1
Description	metacaspase 4 (AtMC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5); cysteine-type endopeptidase (TAIR:AT1G79330.1); Has 835 Blast hits to 815 proteins in 210 species: Archae - 5; Bacteria - 241; Metazoa - 2; Fungi - 193; Plants - 189; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 29841849-29843048)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G79340.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G79340.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 15 + 29842775 -74

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	15	+	29842775	-74

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 29842736 -113

TSS clone G clone + 29842771 -78

TSS clone A clone + 29842775 -74

TSS clone A clone + 29842776 -73

TSS clone A clone + 29842778 -71

TSS clone C clone + 29842781 -68

TSS clone A clone + 29842783 -66

TSS clone T clone + 29842784 -65

TSS clone T clone + 29842803 -46

TSS clone G clone + 29842806 -43

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	29842736	-113
TSS clone	`G`	clone	+	29842771	-78
TSS clone	`A`	clone	+	29842775	-74
TSS clone	`A`	clone	+	29842776	-73
TSS clone	`A`	clone	+	29842778	-71
TSS clone	`C`	clone	+	29842781	-68
TSS clone	`A`	clone	+	29842783	-66
TSS clone	`T`	clone	+	29842784	-65
TSS clone	`T`	clone	+	29842803	-46
TSS clone	`G`	clone	+	29842806	-43

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TAAATATAATATATAAGA + 29842734 29842751 -115 -98

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TAAATATAATATATAAGA`	+	29842734	29842751	-115	-98
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AGTTGGGCCGAAATTAGGCC + 29842483 29842502 -366 -347

AtREG607 AGTTGGGC             PPDB Motif GCCCA PLACE Motif

AtREG449 GTTGGGCC            PPDB Motif GCCCA, CCAACGG PLACE Motif GGGCC, TGGGCY

AtREG414   TTGGGCCG           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG393    TGGGCCGA          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG427     GGGCCGAA         PPDB Motif GCCCA PLACE Motif GGGCC

AtREG506             ATTAGGCC PPDB Motif PLACE Motif

REG TGTTGGGCTTA + 29842506 29842516 -343 -333

AtREG543 TGTTGGGC    PPDB Motif GCCCA PLACE Motif CAACA

AtREG574 GTTGGGCT   PPDB Motif GCCCA, CCAACGG PLACE Motif TGGGCY

AtREG407   TTGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426    TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

REG ACGTGACA + 29842612 29842619 -237 -230

AtREG606 ACGTGACA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ATGCCACGTCAG + 29842645 29842656 -204 -193

AtREG448 ATGCCACG     ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC

AtREG379 TGCCACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG388   GCCACGTC   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG419    CCACGTCA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG440     CACGTCAG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AGTTGGGCCGAAATTAGGCC`		+	29842483	29842502	-366	-347
	AtREG607	`AGTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG449	`GTTGGGCC`		PPDB Motif	`GCCCA, CCAACGG`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG414	`TTGGGCCG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG393	`TGGGCCGA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG427	`GGGCCGAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG506	`ATTAGGCC`		PPDB Motif		PLACE Motif
REG	`TGTTGGGCTTA`		+	29842506	29842516	-343	-333
	AtREG543	`TGTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif	`CAACA`
	AtREG574	`GTTGGGCT`		PPDB Motif	`GCCCA, CCAACGG`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG426	`TGGGCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`ACGTGACA`		+	29842612	29842619	-237	-230
	AtREG606	`ACGTGACA`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`ATGCCACGTCAG`		+	29842645	29842656	-204	-193
	AtREG448	`ATGCCACG`	ABA, DREB1Aox	PPDB Motif		PLACE Motif	`GCCAC`
	AtREG379	`TGCCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG388	`GCCACGTC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG419	`CCACGTCA`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, TGACGTGG, CCACGTCA`
	AtREG440	`CACGTCAG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None