PlantPromoterDB promoter information of AT1G79560.1

Summary of Gene (AT1G79560.1)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G79560 TAIR NCBI
Gene model	AT1G79560.1
Description	encodes an FtsH protease that is localized to the chloroplast

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Overview

Focused view (chromosome 1: 29925976-29927175)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G79560.1 5'->3' (+) Promoter sequence AT1G79550.1 AT1G79550.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G79560.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 2 + 29926743 -233

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	2	+	29926743	-233

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 29926794 -182

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	29926794	-182

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box ATTATATAAC + 29926706 29926715 -270 -261

Y Patch TCTTTCTCCTTC + 29926751 29926762 -225 -214

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ATTATATAAC`	+	29926706	29926715	-270	-261
Y Patch	`TCTTTCTCCTTC`	+	29926751	29926762	-225	-214
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGGTTTAA + 29926647 29926655 -329 -321

AtREG652 ACGGTTTA PPDB Motif PLACE Motif

AtREG473 CGGTTTAA PPDB Motif AACCG(G/A) PLACE Motif

REG TAGTGGGCTGA + 29926673 29926683 -303 -293

AtREG532 TAGTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG510 AGTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG609    TGGGCTGA PPDB Motif GCCCA PLACE Motif TGGGCY

REG CTTAATGGGCTA + 29926689 29926700 -287 -276

AtREG604 CTTAATGG     PPDB Motif PLACE Motif TTAATGG

AtREG396 TTAATGGG    PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG357   TAATGGGC   PPDB Motif GCCCA PLACE Motif

AtREG372    AATGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581     ATGGGCTA PPDB Motif GCCCA PLACE Motif TGGGCY

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGGTTTAA`		+	29926647	29926655	-329	-321
	AtREG652	`ACGGTTTA`		PPDB Motif		PLACE Motif
	AtREG473	`CGGTTTAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TAGTGGGCTGA`		+	29926673	29926683	-303	-293
	AtREG532	`TAGTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG510	`AGTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG609	`TGGGCTGA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`CTTAATGGGCTA`		+	29926689	29926700	-287	-276
	AtREG604	`CTTAATGG`		PPDB Motif		PLACE Motif	`TTAATGG`
	AtREG396	`TTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif	`TTAATGG`
	AtREG357	`TAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG372	`AATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG581	`ATGGGCTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 42 - 29926537 AT1G79550.1, AT1G79550.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	42	-	29926537	AT1G79550.1, AT1G79550.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone - 29926582 AT1G79550.1, AT1G79550.2

TSS clone C clone - 29926540 AT1G79550.1, AT1G79550.2

TSS clone T clone - 29926539 AT1G79550.1, AT1G79550.2

TSS clone G clone - 29926537 AT1G79550.1, AT1G79550.2

TSS clone A clone - 29926536 AT1G79550.1, AT1G79550.2

TSS clone T clone - 29926487 AT1G79550.1, AT1G79550.2

TSS clone C clone - 29926486 AT1G79550.1, AT1G79550.2

TSS clone G clone - 29926483 AT1G79550.1, AT1G79550.2

TSS clone T clone - 29926482 AT1G79550.1, AT1G79550.2

TSS clone T clone - 29926480 AT1G79550.1, AT1G79550.2

TSS clone A clone - 29926442 AT1G79550.1, AT1G79550.2

TSS clone T clone - 29926381 AT1G79550.1, AT1G79550.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	-	29926582	AT1G79550.1, AT1G79550.2
TSS clone	`C`	clone	-	29926540	AT1G79550.1, AT1G79550.2
TSS clone	`T`	clone	-	29926539	AT1G79550.1, AT1G79550.2
TSS clone	`G`	clone	-	29926537	AT1G79550.1, AT1G79550.2
TSS clone	`A`	clone	-	29926536	AT1G79550.1, AT1G79550.2
TSS clone	`T`	clone	-	29926487	AT1G79550.1, AT1G79550.2
TSS clone	`C`	clone	-	29926486	AT1G79550.1, AT1G79550.2
TSS clone	`G`	clone	-	29926483	AT1G79550.1, AT1G79550.2
TSS clone	`T`	clone	-	29926482	AT1G79550.1, AT1G79550.2
TSS clone	`T`	clone	-	29926480	AT1G79550.1, AT1G79550.2
TSS clone	`A`	clone	-	29926442	AT1G79550.1, AT1G79550.2
TSS clone	`T`	clone	-	29926381	AT1G79550.1, AT1G79550.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TTTATATAAG - 29926564 29926573 AT1G79550.1, AT1G79550.2

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTTATATAAG`	-	29926564	29926573	AT1G79550.1, AT1G79550.2
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTAAACCGT - 29926647 29926655 AT1G79550.1, AT1G79550.2

AtREG473 TTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG652 TAAACCGT PPDB Motif PLACE Motif

REG TCAGCCCACTA - 29926673 29926683 AT1G79550.1, AT1G79550.2

AtREG609 TCAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG510   AGCCCACT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG532    GCCCACTA PPDB Motif GCCCA PLACE Motif

REG TAATTGGGCTAGCCCATTAAG - 29926689 29926709 AT1G79550.1, AT1G79550.2

AtREG600 TAATTGGG              PPDB Motif GCCCA PLACE Motif

AtREG418 AATTGGGC             PPDB Motif GCCCA PLACE Motif

AtREG402   ATTGGGCT            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581          TAGCCCAT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372           AGCCCATT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357            GCCCATTA   PPDB Motif GCCCA PLACE Motif

AtREG396             CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG604              CCATTAAG PPDB Motif PLACE Motif TTAATGG