PlantPromoterDB promoter information of AT1G79830.2

Summary of Gene (AT1G79830.2)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G79830 TAIR NCBI
Gene model	AT1G79830.2
Description	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).

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Overview

Focused view (chromosome 1: 30034508-30033309)

`Genome position from initiation codon` `AT1G79830.1 TSS from cDNA TSS information AT1G79830.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G79830.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak T 4 - 30033766 -258

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`T`	4	-	30033766	-258

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTCTCCTCC - 30033755 30033766 -247 -258

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTCTCCTCC`	-	30033755	30033766	-247	-258
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GAAACGACGCCGTTT - 30033845 30033859 -337 -351

AtREG576 GAAACGAC        PPDB Motif PLACE Motif

AtREG415 AAACGACG       PPDB Motif PLACE Motif

AtREG439   AACGACGC      PPDB Motif PLACE Motif

AtREG537    ACGACGCC     PPDB Motif PLACE Motif

AtREG540      GACGCCGT   PPDB Motif PLACE Motif

AtREG497       ACGCCGTT PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

AtREG524        CGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

REG GGGCCCAATAT - 30033999 30034009 -491 -501

AtREG392 GGGCCCAA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352 GGCCCAAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355   GCCCAATA PPDB Motif GCCCA PLACE Motif

AtREG509    CCCAATAT PPDB Motif PLACE Motif

REG GTGGGCTTTTA - 30034011 30034021 -503 -513

AtREG518 GTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376 TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409   GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG549    GGCTTTTA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GAAACGACGCCGTTT`		-	30033845	30033859	-337	-351
	AtREG576	`GAAACGAC`		PPDB Motif		PLACE Motif
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG439	`AACGACGC`		PPDB Motif		PLACE Motif
	AtREG537	`ACGACGCC`		PPDB Motif		PLACE Motif
	AtREG540	`GACGCCGT`		PPDB Motif		PLACE Motif
	AtREG497	`ACGCCGTT`		PPDB Motif	`AAACG(C/G), CCAACGG`	PLACE Motif
	AtREG524	`CGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`GGGCCCAATAT`		-	30033999	30034009	-491	-501
	AtREG392	`GGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG509	`CCCAATAT`		PPDB Motif		PLACE Motif
REG	`GTGGGCTTTTA`		-	30034011	30034021	-503	-513
	AtREG518	`GTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG549	`GGCTTTTA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None