PlantPromoterDB promoter information of AT1G79850.1
Summary of Gene (AT1G79850.1)
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Overview
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Focused view (chromosome 1: 30042922-30041723)
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Genome position
from initiation codon TSS from cDNA TSS information AT1G79850.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G79850.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 28 | - | 30041944 | -22 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 30041963 | -41 |
| TSS clone | T | clone | - | 30041958 | -36 |
| TSS clone | A | clone | - | 30041953 | -31 |
| TSS clone | T | clone | - | 30041952 | -30 |
| TSS clone | A | clone | - | 30041947 | -25 |
| TSS clone | T | clone | - | 30041946 | -24 |
| TSS clone | A | clone | - | 30041943 | -21 |
| TSS clone | A | clone | - | 30041938 | -16 |
| TSS clone | G | clone | - | 30041927 | -5 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCATTTA | - | 30042010 | 30042017 | -88 | -95 | |||
| AtREG443 | CCCATTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATTAGGCCCAGT | - | 30042029 | 30042040 | -107 | -118 | |||
| AtREG506 | ATTAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG360 | TTAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG358 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG410 | AGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG384 | GGCCCAGT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | GTGGGCTTTTA | - | 30042043 | 30042053 | -121 | -131 | |||
| AtREG518 | GTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG549 | GGCTTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | GGGCTTTT | - | 30042076 | 30042083 | -154 | -161 | |||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCCAACGGCACG | - | 30042179 | 30042190 | -257 | -268 | |||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG522 | ACGGCACG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||