PlantPromoterDB promoter information of AT1G80280

Summary of Gene (AT1G80280)

Organism	Arabidopsis thaliana
Chromosome	1
Locus	AT1G80280 TAIR NCBI
Gene model	AT1G80280
Description	hydrolase, alpha/beta fold family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: hydrolase, alpha/beta fold family protein (TAIR:AT1G15490.1); Has 5082 Blast hits to 5073 proteins in 749 species: Archae - 32; Bacteria - 3526; Metazoa - 248; Fungi - 43; Plants - 290; Viruses - 0; Other Eukaryotes - 943 (source: NCBI BLink).

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Overview

Focused view (chromosome 1: 30181491-30180292)

`Genome position from initiation codon` `TSS from cDNA TSS information AT1G80280 5'->3' (-) Promoter sequence AT1G80260.1 AT1G80270.1 AT1G80270.2 AT1G80270.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT1G80280

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 30186586 -445

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	30186586	-445

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 2 + 30180961 AT1G80270.1, AT1G80270.2, AT1G80270.3

TSS peak G 2 + 30180984 AT1G80270.1, AT1G80270.2, AT1G80270.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	2	+	30180961	AT1G80270.1, AT1G80270.2, AT1G80270.3
TSS peak	`G`	2	+	30180984	AT1G80270.1, AT1G80270.2, AT1G80270.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 30180974 AT1G80270.1, AT1G80270.2, AT1G80270.3

TSS clone G clone + 30180988 AT1G80270.1, AT1G80270.2, AT1G80270.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	30180974	AT1G80270.1, AT1G80270.2, AT1G80270.3
TSS clone	`G`	clone	+	30180988	AT1G80270.1, AT1G80270.2, AT1G80270.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAAGCCCATTTA + 30180863 30180875 AT1G80270.1, AT1G80270.2, AT1G80270.3

AtREG409 AAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376 AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372    AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386     GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443      CCCATTTA PPDB Motif GCCCA PLACE Motif