PlantPromoterDB promoter information of AT1G80380.2
Summary of Gene (AT1G80380.2)
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Overview
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Focused view (chromosome 1: 30216332-30217531)
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Genome position
from initiation codon AT1G80380.1 AT1G80380.3 TSS from cDNA TSS information AT1G80380.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT1G80380.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | + | 30217294 | -38 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 30217128 | -204 |
| TSS clone | C | clone | + | 30217146 | -186 |
| TSS clone | T | clone | + | 30217219 | -113 |
| TSS clone | A | clone | + | 30217234 | -98 |
| TSS clone | T | clone | + | 30217265 | -67 |
| TSS clone | T | clone | + | 30217269 | -63 |
| TSS clone | G | clone | + | 30217271 | -61 |
| TSS clone | T | clone | + | 30217272 | -60 |
| TSS clone | G | clone | + | 30217274 | -58 |
| TSS clone | C | clone | + | 30217275 | -57 |
| TSS clone | T | clone | + | 30217281 | -51 |
| TSS clone | T | clone | + | 30217283 | -49 |
| TSS clone | G | clone | + | 30217294 | -38 |
| TSS clone | A | clone | + | 30217295 | -37 |
| TSS clone | A | clone | + | 30217303 | -29 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTCTTCCTC | + | 30217257 | 30217270 | -75 | -62 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAAACCGGAC | + | 30217016 | 30217025 | -316 | -307 | |||
| AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCGGTTTAT | + | 30217077 | 30217085 | -255 | -247 | |||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATCCAACGG | + | 30217166 | 30217174 | -166 | -158 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||