PlantPromoterDB promoter information of AT1G80920
Summary of Gene (AT1G80920)
|
Overview
|
Focused view (chromosome 1: 30405549-30404350)
|
Genome position
from initiation codon AT1G80930.1 TSS from cDNA TSS information AT1G80920 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT1G80920
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 2 | - | 30405116 | -567 |
| TSS peak | A | 8 | - | 30404682 | -133 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 30404689 | -140 |
| TSS clone | T | clone | - | 30404688 | -139 |
| TSS clone | A | clone | - | 30404685 | -136 |
| TSS clone | T | clone | - | 30404684 | -135 |
| TSS clone | T | clone | - | 30404683 | -134 |
| TSS clone | A | clone | - | 30404682 | -133 |
| TSS clone | A | clone | - | 30404681 | -132 |
| TSS clone | A | clone | - | 30404674 | -125 |
| TSS clone | A | clone | - | 30404661 | -112 |
| TSS clone | A | clone | - | 30404649 | -100 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATAAATA | - | 30404713 | 30404724 | -164 | -175 |
| Y Patch | CTTCCTCTCTTT | - | 30404695 | 30404706 | -146 | -157 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAGTCAA | - | 30405241 | 30405248 | -692 | -699 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||