Summary of Gene (AT2G01140.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G01140.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 41 | - | 96649 | -158 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 96653 | -162 |
TSS clone | G | clone | - | 96652 | -161 |
TSS clone | T | clone | - | 96650 | -159 |
TSS clone | A | clone | - | 96589 | -98 |
TSS clone | A | clone | - | 96588 | -97 |
TSS clone | C | clone | - | 96585 | -94 |
TSS clone | C | clone | - | 96580 | -89 |
TSS clone | C | clone | - | 96577 | -86 |
TSS clone | A | clone | - | 96575 | -84 |
TSS clone | T | clone | - | 96558 | -67 |
TSS clone | T | clone | - | 96556 | -65 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTCATTT | - | 96700 | 96707 | -209 | -216 | |||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCGGCCCATTC | - | 96914 | 96924 | -423 | -433 | |||
AtREG457 | CCGGCCCA | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG643 | GCCCATTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCCAACA | - | 96942 | 96949 | -451 | -458 | |||
AtREG543 | GCCCAACA | PPDB Motif | GCCCA  | PLACE Motif | CAACA  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |