PlantPromoterDB promoter information of AT2G01735.1
Summary of Gene (AT2G01735.1)
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Overview
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Focused view (chromosome 2: 323499-324698)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G01735.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G01735.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 324407 | -92 |
| TSS clone peak | A | clone | + | 324408 | -91 |
| TSS clone | A | clone | + | 324412 | -87 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGGCCTAAA | + | 324187 | 324198 | -312 | -301 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG430 | GGCCTAAA | PPDB Motif | PLACE Motif | ||||||
| REG | CGAACCGA | + | 324208 | 324215 | -291 | -284 | |||
| AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCGACCCG | + | 324290 | 324297 | -209 | -202 | |||
| AtREG375 | CCGACCCG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | TAACCGGAT | + | 324318 | 324326 | -181 | -173 | |||
| AtREG621 | TAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG561 | AACCGGAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||