Summary of Gene (AT2G01910.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G01910.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | + | 416910 | -281 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 416911 | -280 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCT | + | 416900 | 416907 | -291 | -284 |
Y Patch | CTCTCTTCTCT | + | 416912 | 416922 | -279 | -269 |
Y Patch | TTTCTCTCT | + | 416940 | 416948 | -251 | -243 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGACACC | + | 416630 | 416637 | -561 | -554 | |||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACGCGCTT | + | 416734 | 416741 | -457 | -450 | |||
AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 2 | + | 405887 | AT2G01900.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCCCTCC | + | 405856 | 405863 | AT2G01900.1 | |
Y Patch | CTTCCTCT | + | 405877 | 405884 | AT2G01900.1 | |
Y Patch | CTCTCTCTTCTT | + | 405911 | 405922 | AT2G01900.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTCCACGTCAG | + | 405795 | 405805 | AT2G01900.1 | ||||
AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG419 | CCACGTCA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |