Summary of Gene (AT2G02100)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G02100 5'->3' (+) Promoter sequence AT2G02103.1
AT2G02110.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 146 | + | 528353 | -44 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 528197 | -200 |
TSS clone | C | clone | + | 528342 | -55 |
TSS clone | A | clone | + | 528350 | -47 |
TSS clone | A | clone | + | 528353 | -44 |
TSS clone | C | clone | + | 528354 | -43 |
TSS clone | C | clone | + | 528356 | -41 |
TSS clone | T | clone | + | 528357 | -40 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTTTATATAGT | + | 528317 | 528328 | -80 | -69 |
Y Patch | CTCTCTTT | + | 528314 | 528321 | -83 | -76 |
Y Patch | CTCTCTCTTT | + | 528375 | 528384 | -22 | -13 |
Y Patch | TCTCTCTT | + | 528386 | 528393 | -11 | -4 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAACGCGT | + | 528268 | 528275 | -129 | -122 | |||
AtREG633 | AAACGCGT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |