PlantPromoterDB promoter information of AT2G02110.1
Summary of Gene (AT2G02110.1)
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Overview
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Focused view (chromosome 2: 538441-537242)
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Genome position
TSS from cDNA TSS information AT2G02110.1 5'->3' (-) Promoter sequence AT2G02120.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G02110.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 538250 | AT2G02120.1 |
| TSS clone | G | clone | + | 538251 | AT2G02120.1 |
| TSS clone peak | T | clone | + | 538252 | AT2G02120.1 |
| TSS clone peak | C | clone | + | 538254 | AT2G02120.1 |
| TSS clone | A | clone | + | 538255 | AT2G02120.1 |
| TSS clone | C | clone | + | 538256 | AT2G02120.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATATAGT | + | 538218 | 538229 | AT2G02120.1 | |
| Y Patch | TCTCTCTC | + | 538287 | 538294 | AT2G02120.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGTGTCAC | + | 537969 | 537976 | AT2G02120.1 | ||||
| AtREG498 | CGTGTCAC | ABA | PPDB Motif | PLACE Motif | |||||