PlantPromoterDB promoter information of AT2G02110.1
Summary of Gene (AT2G02110.1)
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Overview
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Focused view (chromosome 2: 540191-538992)
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Genome position
TSS from cDNA TSS information AT2G02110.1 5'->3' (-) Promoter sequence AT2G02120.1
AT2G02130.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G02110.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 166 | + | 540018 | AT2G02130.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 540018 | AT2G02130.1 |
| TSS clone | C | clone | + | 540019 | AT2G02130.1 |
| TSS clone | G | clone | + | 540021 | AT2G02130.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATATAGT | + | 539983 | 539994 | AT2G02130.1 | |
| Y Patch | TCTCTCTCT | + | 540049 | 540057 | AT2G02130.1 | |
| Y Patch | TCCCTCTC | + | 540059 | 540066 | AT2G02130.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AAAACGACA | + | 539853 | 539861 | AT2G02130.1 | ||||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||