PlantPromoterDB promoter information of AT2G03680.2

Summary of Gene (AT2G03680.2)

Organism	Arabidopsis thaliana
Chromosome	2
Locus	AT2G03680 TAIR NCBI
Gene model	AT2G03680.2
Description	The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.

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Overview

Focused view (chromosome 2: 1120398-1121597)

`Genome position from initiation codon` `AT2G03670.1 AT2G03680.1 TSS from cDNA TSS information AT2G03680.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT2G03680.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 38 + 1120804 -594

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	38	+	1120804	-594

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 1120804 -594

TSS clone G clone + 1120805 -593

TSS clone T clone + 1120806 -592

TSS clone A clone + 1120808 -590

TSS clone G clone + 1120809 -589

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	1120804	-594
TSS clone	`G`	clone	+	1120805	-593
TSS clone	`T`	clone	+	1120806	-592
TSS clone	`A`	clone	+	1120808	-590
TSS clone	`G`	clone	+	1120809	-589

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CTTATAAATA + 1120770 1120779 -628 -619

Y Patch CTTCTTCTCCT + 1120828 1120838 -570 -560

Y Patch TTTCTTCTTC + 1120843 1120852 -555 -546

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTATAAATA`	+	1120770	1120779	-628	-619
Y Patch	`CTTCTTCTCCT`	+	1120828	1120838	-570	-560
Y Patch	`TTTCTTCTTC`	+	1120843	1120852	-555	-546
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATGGCCCA + 1120516 1120523 -882 -875

AtREG437 ATGGCCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ATAAACCGGTTTT + 1120646 1120658 -752 -740

AtREG598 ATAAACCG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

AtREG542      CCGGTTTT PPDB Motif AACCG(G/A) PLACE Motif

REG CGTTTTGA + 1120717 1120724 -681 -674

AtREG653 CGTTTTGA PPDB Motif AAACG(C/G) PLACE Motif

REG TTAAACCGGAA + 1120731 1120741 -667 -657

AtREG473 TTAAACCG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

REG AAAACCGG + 1120756 1120763 -642 -635

AtREG542 AAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATGGCCCA`		+	1120516	1120523	-882	-875
	AtREG437	`ATGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`ATAAACCGGTTTT`		+	1120646	1120658	-752	-740
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG436	`AAACCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG542	`CCGGTTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGTTTTGA`		+	1120717	1120724	-681	-674
	AtREG653	`CGTTTTGA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`TTAAACCGGAA`		+	1120731	1120741	-667	-657
	AtREG473	`TTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`AAAACCGG`		+	1120756	1120763	-642	-635
	AtREG542	`AAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None