Summary of Gene (AT2G04780)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G04780 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 1676735 | -753 |
TSS peak | A | 31 | + | 1676979 | -509 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 1676742 | -746 |
TSS clone | T | clone | + | 1676974 | -514 |
TSS clone | A | clone | + | 1676979 | -509 |
TSS clone | T | clone | + | 1676980 | -508 |
TSS clone | C | clone | + | 1677011 | -477 |
TSS clone | G | clone | + | 1677217 | -271 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CATCTCTCTTCTTCCTCCTCT | + | 1676948 | 1676968 | -540 | -520 |
Y Patch | CTTCTCTTC | + | 1676970 | 1676978 | -518 | -510 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACGGCA | + | 1676802 | 1676810 | -686 | -678 | |||
AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG500 | AAACGGCA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |