PlantPromoterDB promoter information of AT2G05070
Summary of Gene (AT2G05070)
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Overview
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Focused view (chromosome 2: 1801329-1800130)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G05070 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G05070
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 111 | - | 1800382 | -53 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 1800391 | -62 |
| TSS clone | A | clone | - | 1800389 | -60 |
| TSS clone | T | clone | - | 1800388 | -59 |
| TSS clone | A | clone | - | 1800387 | -58 |
| TSS clone | A | clone | - | 1800386 | -57 |
| TSS clone | C | clone | - | 1800381 | -52 |
| TSS clone | A | clone | - | 1800368 | -39 |
| TSS clone | T | clone | - | 1800351 | -22 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTTATAAAAC | - | 1800413 | 1800422 | -84 | -93 |
| Y Patch | CTCTCTCTTC | - | 1800370 | 1800379 | -41 | -50 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTGACGTGTAC | - | 1800455 | 1800465 | -126 | -136 | |||
| AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG517 | TGACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG562 | ACGTGTAC | ABA, Auxin | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||