PlantPromoterDB promoter information of AT2G05380
Summary of Gene (AT2G05380)
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Overview
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Focused view (chromosome 2: 1965851-1967050)
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Genome position
from initiation codon AT2G05380.2 TSS from cDNA TSS information AT2G05380 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G05380
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 452 | + | 1966816 | -35 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 1966816 | -35 |
| TSS clone | T | clone | + | 1966817 | -34 |
| TSS clone | T | clone | + | 1966818 | -33 |
| TSS clone | A | clone | + | 1966820 | -31 |
| TSS clone | T | clone | + | 1966821 | -30 |
| TSS clone | C | clone | + | 1966824 | -27 |
| TSS clone | A | clone | + | 1966826 | -25 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATTATAAATA | + | 1966782 | 1966792 | -69 | -59 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GATGACGT | + | 1966521 | 1966528 | -330 | -323 | |||
| AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | ATCCAACG | + | 1966599 | 1966606 | -252 | -245 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | GACCCGAC | + | 1966620 | 1966627 | -231 | -224 | |||
| AtREG390 | GACCCGAC | PPDB Motif | CCGAC, GGGACCC | PLACE Motif | CCGAC | ||||
| REG | TTGACTTT | + | 1966751 | 1966758 | -100 | -93 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||