PlantPromoterDB promoter information of AT2G05520
Summary of Gene (AT2G05520)
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Overview
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Focused view (chromosome 2: 2025217-2026416)
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Genome position
from initiation codon AT2G05520.2 AT2G05520.3 AT2G05520.4 AT2G05520.5 AT2G05520.6 TSS from cDNA TSS information AT2G05520 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G05520
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 262 | + | 2026164 | -53 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 2026162 | -55 |
| TSS clone | T | clone | + | 2026163 | -54 |
| TSS clone | G | clone | + | 2026164 | -53 |
| TSS clone | C | clone | + | 2026165 | -52 |
| TSS clone | A | clone | + | 2026166 | -51 |
| TSS clone | T | clone | + | 2026167 | -50 |
| TSS clone | C | clone | + | 2026170 | -47 |
| TSS clone | T | clone | + | 2026174 | -43 |
| TSS clone | A | clone | + | 2026184 | -33 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCTCCTC | + | 2026115 | 2026124 | -102 | -93 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGACTTT | + | 2026099 | 2026106 | -118 | -111 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||