PlantPromoterDB promoter information of AT2G06520
Summary of Gene (AT2G06520)
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Overview
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Focused view (chromosome 2: 2589218-2588019)
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Genome position
from initiation codon AT2G06530.1 TSS from cDNA TSS information AT2G06520 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G06520
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 264 | - | 2588279 | -61 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 2588298 | -80 |
| TSS clone | G | clone | - | 2588289 | -71 |
| TSS clone | C | clone | - | 2588278 | -60 |
| TSS clone | A | clone | - | 2588277 | -59 |
| TSS clone | T | clone | - | 2588276 | -58 |
| TSS clone | A | clone | - | 2588271 | -53 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTC | - | 2588291 | 2588298 | -73 | -80 |
| Y Patch | TCTCTCTTCTC | - | 2588307 | 2588317 | -89 | -99 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTGCCACGTA | - | 2588365 | 2588374 | -147 | -156 | |||
| AtREG468 | CTGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG413 | GCCACGTA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||
| REG | GCCCAATAG | - | 2588440 | 2588448 | -222 | -230 | |||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG624 | CCCAATAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGAACCGGAC | - | 2588473 | 2588482 | -255 | -264 | |||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CGAACCGA | - | 2588518 | 2588525 | -300 | -307 | |||
| AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||