PlantPromoterDB promoter information of AT2G07040
Summary of Gene (AT2G07040)
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Overview
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Focused view (chromosome 2: 2924171-2925370)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G07040 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G07040
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 2916538 | -83 |
| TSS clone peak | T | clone | + | 2916539 | -82 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTCTCTTTCTTTCCT | + | 2916486 | 2916504 | -135 | -117 |
| Y Patch | TCTCCTTC | + | 2916566 | 2916573 | -55 | -48 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAACCGGAA | + | 2916328 | 2916336 | -293 | -285 | |||
| AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 8 | + | 2924457 | AT2G07050.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 2924447 | AT2G07050.1 |
| TSS clone | A | clone | + | 2924448 | AT2G07050.1 |
| TSS clone | T | clone | + | 2924453 | AT2G07050.1 |
| TSS clone | T | clone | + | 2924485 | AT2G07050.1 |
| TSS clone | A | clone | + | 2924504 | AT2G07050.1 |
| TSS clone | A | clone | + | 2924622 | AT2G07050.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTCTTC | + | 2924485 | 2924495 | AT2G07050.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CACGTGACA | + | 2924377 | 2924385 | AT2G07050.1 | ||||
| AtREG583 | CACGTGAC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||