PlantPromoterDB promoter information of AT2G13360
Summary of Gene (AT2G13360)
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Overview
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Focused view (chromosome 2: 5540052-5538853)
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Genome position
from initiation codon AT2G13360.2 TSS from cDNA TSS information AT2G13360 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G13360
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 13 | - | 5541270 | -368 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 5541351 | -449 |
| TSS clone | A | clone | - | 5541330 | -428 |
| TSS clone | A | clone | - | 5541297 | -395 |
| TSS clone | T | clone | - | 5541272 | -370 |
| TSS clone | C | clone | - | 5541270 | -368 |
| TSS clone | A | clone | - | 5541269 | -367 |
| TSS clone | A | clone | - | 5541268 | -366 |
| TSS clone | T | clone | - | 5541263 | -361 |
| TSS clone | C | clone | - | 5541260 | -358 |
| TSS clone | T | clone | - | 5541259 | -357 |
| TSS clone | G | clone | - | 5541256 | -354 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCTC | - | 5541221 | 5541228 | -319 | -326 |
| Y Patch | CCTCCCTC | - | 5541258 | 5541265 | -356 | -363 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCAATAAG | - | 5541410 | 5541417 | -508 | -515 | |||
| AtREG611 | CCAATAAG | PPDB Motif | PLACE Motif | ||||||
| REG | CTGCCACG | - | 5541429 | 5541436 | -527 | -534 | |||
| AtREG468 | CTGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||