Summary of Gene (AT2G13360)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G13360 5'->3' (-) Promoter sequence AT2G13363.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | C | 13 | - | 5541270 | -368 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 5541351 | -449 |
TSS clone | A | clone | - | 5541330 | -428 |
TSS clone | A | clone | - | 5541297 | -395 |
TSS clone | T | clone | - | 5541272 | -370 |
TSS clone | C | clone | - | 5541270 | -368 |
TSS clone | A | clone | - | 5541269 | -367 |
TSS clone | A | clone | - | 5541268 | -366 |
TSS clone | T | clone | - | 5541263 | -361 |
TSS clone | C | clone | - | 5541260 | -358 |
TSS clone | T | clone | - | 5541259 | -357 |
TSS clone | G | clone | - | 5541256 | -354 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCTCTC | - | 5541221 | 5541228 | -319 | -326 |
Y Patch | CCTCCCTC | - | 5541258 | 5541265 | -356 | -363 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCAATAAG | - | 5541410 | 5541417 | -508 | -515 | |||
AtREG611 | CCAATAAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CTGCCACG | - | 5541429 | 5541436 | -527 | -534 | |||
AtREG468 | CTGCCACG | ABA | PPDB Motif |   | PLACE Motif | GCCAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |