PlantPromoterDB promoter information of AT2G14890
Summary of Gene (AT2G14890)
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Overview
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Focused view (chromosome 2: 6398679-6399878)
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Genome position
from initiation codon AT2G14890.2 TSS from cDNA TSS information AT2G14890 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G14890
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 366 | + | 6399621 | -58 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 6399621 | -58 |
| TSS clone | C | clone | + | 6399622 | -57 |
| TSS clone | A | clone | + | 6399623 | -56 |
| TSS clone | T | clone | + | 6399624 | -55 |
| TSS clone | T | clone | + | 6399629 | -50 |
| TSS clone | A | clone | + | 6399631 | -48 |
| TSS clone | C | clone | + | 6399632 | -47 |
| TSS clone | T | clone | + | 6399633 | -46 |
| TSS clone | A | clone | + | 6399635 | -44 |
| TSS clone | A | clone | + | 6399653 | -26 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCCTCCT | + | 6399609 | 6399617 | -70 | -62 |
| Y Patch | TCTCTCAT | + | 6399638 | 6399645 | -41 | -34 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTGTCA | + | 6399457 | 6399464 | -222 | -215 | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | ACGACGCC | + | 6399544 | 6399551 | -135 | -128 | |||
| AtREG537 | ACGACGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCGTTTTGA | + | 6399559 | 6399568 | -120 | -111 | |||
| AtREG566 | CGCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG585 | GCGTTTTG | PPDB Motif | AAACG(C/G) | PLACE Motif | CAAAACGC | ||||
| AtREG653 | CGTTTTGA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||