PlantPromoterDB promoter information of AT2G14910.2
Summary of Gene (AT2G14910.2)
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Overview
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Focused view (chromosome 2: 6410015-6408816)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G14910.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G14910.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 85 | - | 6409097 | -82 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 6409171 | -156 |
| TSS clone | T | clone | - | 6409169 | -154 |
| TSS clone | T | clone | - | 6409165 | -150 |
| TSS clone | T | clone | - | 6409141 | -126 |
| TSS clone | T | clone | - | 6409136 | -121 |
| TSS clone | A | clone | - | 6409130 | -115 |
| TSS clone | T | clone | - | 6409100 | -85 |
| TSS clone | A | clone | - | 6409097 | -82 |
| TSS clone | T | clone | - | 6409089 | -74 |
| TSS clone | T | clone | - | 6409046 | -31 |
| TSS clone | A | clone | - | 6409045 | -30 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGTCACGT | - | 6409151 | 6409158 | -136 | -143 | |||
| AtREG606 | TGTCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ATAACCGGTC | - | 6409208 | 6409217 | -193 | -202 | |||
| AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG552 | AACCGGTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AAAACCGG | - | 6409234 | 6409241 | -219 | -226 | |||
| AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGAACCGGAC | - | 6409252 | 6409261 | -237 | -246 | |||
| AtREG480 | TGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTAAAGCC | - | 6409324 | 6409331 | -309 | -316 | |||
| AtREG545 | TTAAAGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||