PlantPromoterDB promoter information of AT2G16600.2
Summary of Gene (AT2G16600.2)
|
Overview
|
Focused view (chromosome 2: 7199862-7201061)
|
Genome position
from initiation codon AT2G16600.1 TSS from cDNA TSS information AT2G16600.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT2G16600.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 205 | + | 7200808 | -54 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 7200808 | -54 |
| TSS clone | C | clone | + | 7200809 | -53 |
| TSS clone | C | clone | + | 7200811 | -51 |
| TSS clone | C | clone | + | 7200817 | -45 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATAAAAC | + | 7200772 | 7200783 | -90 | -79 |
| Y Patch | TTCCTTCTCTT | + | 7200765 | 7200775 | -97 | -87 |
| Y Patch | TCTCTTTC | + | 7200800 | 7200807 | -62 | -55 |
| Y Patch | TCTTCTTCTCC | + | 7200827 | 7200837 | -35 | -25 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAATGGGCTTC | + | 7200529 | 7200539 | -333 | -323 | |||
| AtREG551 | CAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG476 | TGGGCTTC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | CATTGGGCTTA | + | 7200549 | 7200559 | -313 | -303 | |||
| AtREG461 | CATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG402 | ATTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | TTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG426 | TGGGCTTA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | GAAACGAC | + | 7200587 | 7200594 | -275 | -268 | |||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
| REG | TCCACGTGTCA | + | 7200731 | 7200741 | -131 | -121 | |||
| AtREG408 | TCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | |||
| AtREG382 | CCACGTGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | CAACGGTC | + | 7200746 | 7200753 | -116 | -109 | |||
| AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||