Summary of Gene (AT2G16660)
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Overview |
Genome position
from initiation codon AT2G16660.1 TSS from cDNA TSS information AT2G16660 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 89 | - | 7221621 | -29 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 7221642 | -50 |
TSS clone | C | clone | - | 7221620 | -28 |
TSS clone | T | clone | - | 7221613 | -21 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTCTATAAAAC | - | 7221649 | 7221660 | -57 | -68 |
Y Patch | TTCTCTTCT | - | 7221656 | 7221664 | -64 | -72 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCGTCGT | - | 7221795 | 7221802 | -203 | -210 | |||
AtREG537 | GGCGTCGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACGGTTTAT | - | 7221839 | 7221847 | -247 | -255 | |||
AtREG652 | ACGGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | T | clone | - | 7218394 | AT2G16650.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |