Summary of Gene (AT2G16750)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G16750 5'->3' (+) Promoter sequence AT2G16780.1
AT2G16790.1 AT2G16790.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 7270996 | -790 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CATATAAAAC | + | 7270959 | 7270968 | -827 | -818 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCGTTTA | + | 7270807 | 7270814 | -979 | -972 | |||
AtREG613 | GCCGTTTA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | CTAAGCCC | + | 7270840 | 7270847 | -946 | -939 | |||
AtREG634 | CTAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 10 | - | 7283630 | AT2G16780.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 7283630 | AT2G16780.1 |
TSS clone | G | clone | - | 7283612 | AT2G16780.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACGGCA | - | 7283721 | 7283729 | AT2G16780.1 | ||||
AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG500 | AAACGGCA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | GAATGGGCTTTACAGGCCCATAA | - | 7283776 | 7283798 | AT2G16780.1 | ||||
AtREG643 | GAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG433 | ACAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG370 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG394 | GCCCATAA | PPDB Motif | GCCCA  | PLACE Motif |   |