PlantPromoterDB promoter information of AT2G16930.1
Summary of Gene (AT2G16930.1)
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Overview
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Focused view (chromosome 2: 7340492-7341691)
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Genome position
from initiation codon AT2G16930.3 TSS from cDNA TSS information AT2G16930.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G16930.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | + | 7341119 | -373 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 7341123 | -369 |
| TSS clone | G | clone | + | 7341136 | -356 |
| TSS clone | C | clone | + | 7341157 | -335 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTTT | + | 7341084 | 7341091 | -408 | -401 |
| Y Patch | TCTTTCTCTCTC | + | 7341107 | 7341118 | -385 | -374 |
| Y Patch | CCTCTCTCCTTCTCTC | + | 7341140 | 7341155 | -352 | -337 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATATTGGG | + | 7340998 | 7341005 | -494 | -487 | |||
| AtREG509 | ATATTGGG | PPDB Motif | PLACE Motif | ||||||
| REG | AAACCGAACCGAACC | + | 7341013 | 7341027 | -479 | -465 | |||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG556 | AACCGAACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGGTTCGG | + | 7341071 | 7341078 | -421 | -414 | |||
| AtREG655 | TGGTTCGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||