PlantPromoterDB promoter information of AT2G17130.2
Summary of Gene (AT2G17130.2)
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Overview
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Focused view (chromosome 2: 7463466-7462267)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G17130.2 5'->3' (-) Promoter sequence AT2G17140.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G17130.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 7462554 | -88 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 7462557 | -91 |
| TSS clone | G | clone | - | 7462554 | -88 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCTTCCTCT | - | 7462516 | 7462527 | -50 | -61 |
| Y Patch | CTCTTCTTC | - | 7462529 | 7462537 | -63 | -71 |
| Y Patch | CTTTCTTC | - | 7462555 | 7462562 | -89 | -96 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGCTATT | - | 7462610 | 7462617 | -144 | -151 | |||
| AtREG584 | GGGCTATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGGTTAAA | - | 7462624 | 7462631 | -158 | -165 | |||
| AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | + | 7462811 | AT2G17140.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||