Summary of Gene (AT2G17280)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G17280 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 7513254 | -20 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 42 | + | 7508572 | AT2G17265.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 7508507 | AT2G17265.1 |
TSS clone | A | clone | + | 7508572 | AT2G17265.1 |
TSS clone | T | clone | + | 7508573 | AT2G17265.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTCTTATATATT | + | 7508536 | 7508547 | AT2G17265.1 | |
Y Patch | CATCTCTCTCTT | + | 7508529 | 7508540 | AT2G17265.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTAAACCGTTGGAT | + | 7508421 | 7508434 | AT2G17265.1 | ||||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG652 | TAAACCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG  | PLACE Motif | YAACKG, CNGTTR  | ||||
AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG  | PLACE Motif |   |