Summary of Gene (AT2G17710)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G17710 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | T | 8 | + | 7693729 | -127 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 7693680 | -176 |
TSS clone | G | clone | + | 7693728 | -128 |
TSS clone | T | clone | + | 7693729 | -127 |
TSS clone | G | clone | + | 7693743 | -113 |
TSS clone | T | clone | + | 7693852 | -4 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTCATTT | + | 7693431 | 7693438 | -425 | -418 | |||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAATGACG | + | 7693441 | 7693448 | -415 | -408 | |||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGTCGTTTC | + | 7693617 | 7693625 | -239 | -231 | |||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG576 | GTCGTTTC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAGTCAA | + | 7697297 | 7697304 | AT2G17720.1 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  |