PlantPromoterDB promoter information of AT2G17840
Summary of Gene (AT2G17840)
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Overview
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Focused view (chromosome 2: 7758798-7757599)
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Genome position
from initiation codon TSS from cDNA TSS information AT2G17840 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT2G17840
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | - | 7757848 | -50 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 7757852 | -54 |
| TSS clone | A | clone | - | 7757848 | -50 |
| TSS clone | A | clone | - | 7757847 | -49 |
| TSS clone | A | clone | - | 7757843 | -45 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AATATAAATA | - | 7757874 | 7757883 | -76 | -85 |
| Y Patch | TCTTCTCC | - | 7757820 | 7757827 | -22 | -29 |
| Y Patch | CCTTCTTCTTCTTC | - | 7757885 | 7757898 | -87 | -100 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCCACGT | - | 7757944 | 7757951 | -146 | -153 | |||
| AtREG547 | ATCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | ACACGCGTCATTT | - | 7757961 | 7757973 | -163 | -175 | |||
| AtREG536 | ACACGCGT | ABA, Drought | PPDB Motif | PLACE Motif | ACACNNG | ||||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||
| REG | AACCGAACCGGTTTAT | - | 7757982 | 7757997 | -184 | -199 | |||
| AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG528 | GAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||