Summary of Gene (AT2G19080.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G19080.1 5'->3' (+) Promoter sequence AT2G19070.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 8262763 | -55 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 8262757 | -61 |
TSS clone | C | clone | + | 8262764 | -54 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTCTTCTC | + | 8262720 | 8262731 | -98 | -87 |
Y Patch | CATCTCTCTCT | + | 8262736 | 8262746 | -82 | -72 |
Y Patch | CTTCTTCTTCTT | + | 8262772 | 8262783 | -46 | -35 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTTAATGGG | + | 8262608 | 8262616 | -210 | -202 | |||
AtREG604 | CTTAATGG | PPDB Motif |   | PLACE Motif | TTAATGG  | ||||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
REG | TGTGGGCCTTTTAAAGCCCAAAA | + | 8262622 | 8262644 | -196 | -174 | |||
AtREG612 | TGTGGGCC | DREB1Aox | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG482 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG359 | GGGCCTTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG545 | TTAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG365 | TAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG529 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AACCCGACCGACT | + | 8262676 | 8262688 | -142 | -130 | |||
AtREG580 | AACCCGAC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG405 | ACCCGACC | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC, RCCGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 8261985 | AT2G19070.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |