Summary of Gene (AT2G20450.1)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT2G20450.1 5'->3' (+) Promoter sequence AT2G20440.1
AT2G20440.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 8813866 | -57 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 8813862 | -61 |
TSS clone | A | clone | + | 8813866 | -57 |
TSS clone | A | clone | + | 8813899 | -24 |
TSS clone | T | clone | + | 8813904 | -19 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCT | + | 8813904 | 8813911 | -19 | -12 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTTAACCGAACCA | + | 8813683 | 8813695 | -240 | -228 | |||
AtREG645 | TTTAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | ACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG655 | CCGAACCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTAAACCGA | + | 8813726 | 8813734 | -197 | -189 | |||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TAAACGACGTC | + | 8813751 | 8813761 | -172 | -162 | |||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG493 | AACGACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG431 | ACGACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
REG | TTAATGGGCCTTTAA | + | 8813779 | 8813793 | -144 | -130 | |||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG359 | GGGCCTTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG467 | GGCCTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TAGTGGGCTTC | + | 8813800 | 8813810 | -123 | -113 | |||
AtREG532 | TAGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG510 | AGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG518 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG476 | TGGGCTTC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |