Summary of Gene (AT2G20490.2)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT2G20490.2 5'->3' (+) Promoter sequence AT2G20480.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 8831727 | -170 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 8831723 | -174 |
TSS clone | C | clone | + | 8831725 | -172 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTTATATACAC | + | 8831685 | 8831696 | -212 | -201 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCACACGTGAC | + | 8831570 | 8831580 | -327 | -317 | |||
AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG460 | CACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG628 | ACACGTGA | DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG583 | CACGTGAC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
REG | AGTTGGGCTC | + | 8831600 | 8831609 | -297 | -288 | |||
AtREG607 | AGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG533 | TTGGGCTC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | GTAGGCCCATTG | + | 8831618 | 8831629 | -279 | -268 | |||
AtREG435 | GTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG551 | GCCCATTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAAAAGCCCATTT | + | 8831655 | 8831667 | -242 | -230 | |||
AtREG589 | AAAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | - | 8831518 | AT2G20480.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTCACGTGTGA | - | 8831570 | 8831580 | AT2G20480.1 | ||||
AtREG583 | GTCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | GAGCCCAACT | - | 8831600 | 8831609 | AT2G20480.1 | ||||
AtREG533 | GAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG607 | GCCCAACT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CAATGGGCCTAC | - | 8831618 | 8831629 | AT2G20480.1 | ||||
AtREG551 | CAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG435 | GGGCCTAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | AAATGGGCTTTTT | - | 8831655 | 8831667 | AT2G20480.1 | ||||
AtREG386 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG589 | GGCTTTTT | PPDB Motif |   | PLACE Motif |   |